https://enanomapper.adma.ai
The Nanoinformatix database is accessible only to project partners.
Ask your WP leader for database access
- In case you don't have user and password
- In case you have used eNanoMapper database from another project (e.g. NanoReg2)
- In case you have self-registered - while registration is open to anybody, the new users has to be approved (and be project members)! Self registration will not grant access to the database !
Click on Log in link at the top right.
- The log in window appears.
Once logged in, you will be redirected to the main screen.
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Click on NANOINFORMATIX icon to go to the H2020 NANOINFORMATIX database main project page
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If you are not logged in, or do not have access, an error message will appear on bottom right.
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Click on NANOINFORMATIX icon to go to the H2020 NANOINFORMATIX database main project page
Main project page
On the main page there are several links to the Search, Template Wizard, User guide (this page), etc.
Click on the Search link to go to the Search page
Search page
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On the search page there is a search box on the top right , a summary panel on the left and the results are shown at the main panel.
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The database includes results from multiple sources.
There are several summaries at the left panel:
- Project
- Study providers
- Nanomaterial type
- Nanomaterials
- Protocols
- Protocol annotation
- Method
- Method annotation
- P-Chem
- Tox
- Ecotox
- Cell
- Experiment year
- References
- Endpoint
- Endpoint annotation
- Release
Every panel is expandable and shows the types of elements found for the particular query
Expand the Projects panel and click on SANOWORK. This will filter the results and only data generated by SANOWORK project will be shown.
The filters can be combined.
Expand the Nanomaterial type panel and select carbon nanotube. These are ontology terms assigned to each material , e.g. NPO_606
The panels show the types and counts of elements found for the particular query
i.e, the SANOWORK project and carbon nanotube materials in this case.
The Methods panel shown indicate there is SANOWORK data for carbon nanotube measured by these methods. The Method annotation panel contains the ontology terms denoting the same methods.
Exploring the data
Per material - click the Material and Study details link for particular material
Export data for all query results - Export tab
Compact summary report
- select
Compact data reportfrom the dropdown menu, click onXLSXicon and finally click onDownload filtered entries as XLSX
The report is an Excel file
- Try exporting the same data into different report layouts (select from the dropdown menu).
Data export
Select the TXT icon and click on Download filtered entries as TSV
The result is a spreadsheet (.txt , tab separated text file)
Predefined queries
Select titanium dioxide and click Apply. This will change the active query and will select TiO2 materials.
This query could be further refined using the widgets at the left, and data exported as described.
Search by ontology terms
OBI_0302736 (comet assay) is a term defined in Ontology for Biomedical Investigations (OBI) BioPortal link
Summary
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Various types of graphical summaries are available at the Dashboard project page
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Download as image (SVG, PNG) or Excel files
Programmatic access (Application Programming Interface - API)
API documentation
- Online interactive API documentation with standard OpenAPI3 format
eNanoMapper client libraries
- Python : https://pypi.org/project/pynanomapper/
- R : https://github.com/enanomapper/renm
- JavaScript : https://github.com/enanomapper/ambit.js/
- JavaScript : https://github.com/ideaconsult/jToxKit
Jupyter notebooks
https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/tutorial.ipynb https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/summary.ipynb https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/explore.ipynb
Summary charts generated with explore.ipynb
Data entry
The data entry for eNanoMapper and the Template Wizard are described in this tutorial.